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    LOC4342563 large ribosomal subunit protein uL4z [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342563, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342563
    Gene description
    large ribosomal subunit protein uL4z
    Locus tag
    OSNPB_070180900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_E09.28
    Expression
    Ubiquitous expression in flower buds (RPKM 216.6), flowers (RPKM 133.4) and 6 other tissues See more
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    Genomic context

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    See LOC4342563 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4323723..4326118)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4263168..4265662)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1 Neighboring gene heterogeneous nuclear ribonucleoprotein Q Neighboring gene pyruvate kinase isozyme A, chloroplastic Neighboring gene S-type anion channel SLAH2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL4z
    Names
    60S ribosomal protein L4-1
    Os07g0180900
    putative 60S ribosomal protein L4/L1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4323723..4326118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791525.3 → XP_015647011.1  large ribosomal subunit protein uL4z

      UniProtKB/TrEMBL
      A0A0P0X2W1, A0A8J8XHR7, A2YIS2, A3BH67, Q6ZLB8
      Conserved Domains (1) summary
      PLN00185
      Location:1 → 405
      PLN00185; 60S ribosomal protein L4-1; Provisional
    Nucleotide Protein
    Heading Accession and Version

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