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    LOC4324517 geranylgeranyl transferase type-1 subunit beta [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324517, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324517
    Gene description
    geranylgeranyl transferase type-1 subunit beta
    Locus tag
    OSNPB_010150200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HACD; PAS2B; OsJ_00388; OsJ_000378; P0009G03.5
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    Genomic context

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    See LOC4324517 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2721274..2725399)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2717836..2721169)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324515 Neighboring gene very-long-chain enoyl-CoA reductase Neighboring gene uncharacterized LOC111946217 Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CAAX-protein geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein geranylgeranylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAAX-protein geranylgeranyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B
    Names
    3-hydroxyacyl-CoA dehydratase PASTICCINO 2B
    LOC_Os01g05694
    Os01g0150100
    Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B
    protein tyrosine phosphatase-like protein
    NP_001347559.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360630.1 → NP_001347559.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B

      Status: VALIDATED

      Source sequence(s)
      AK071085, AU173029, CI595119
      UniProtKB/TrEMBL
      B8ADA6, B9ESW2
      Conserved Domains (1) summary
      cd02895
      Location:11 → 324
      GGTase-I; Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes ...

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2721274..2725399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZEJ0.1 GenPept UniProtKB/Swiss-Prot:Q5ZEJ0

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials