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    LOC4349782 2-carboxy-D-arabinitol-1-phosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349782, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349782
    Gene description
    2-carboxy-D-arabinitol-1-phosphatase
    Locus tag
    OSNPB_110150100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 123.3), roots after flowering (RPKM 73.3) and 3 other tissues See more
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    Genomic context

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    See LOC4349782 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2375222..2380090)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2329963..2333242)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276931 Neighboring gene PAN domain-containing protein At5g03700 Neighboring gene uncharacterized LOC136351253 Neighboring gene uncharacterized LOC4349783

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-carboxy-D-arabinitol-1-phosphatase
    Names
    Os11g0150100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2375222..2380090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761526.2 → XP_015617012.1  2-carboxy-D-arabinitol-1-phosphatase

      UniProtKB/TrEMBL
      A0A0P0XZ82, B8BJ46, Q53PY7
      Conserved Domains (2) summary
      COG0406
      Location:271 → 478
      PhoE; Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism]
      pfam00300
      Location:56 → 250
      His_Phos_1; Histidine phosphatase superfamily (branch 1)

    RNA

    1. XR_010737417.1 RNA Sequence

    2. XR_010737418.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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