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    LOC4323899 acidic endochitinase SE2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323899, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323899
    Gene description
    acidic endochitinase SE2
    Locus tag
    OSNPB_010303100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11235063..11236280)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11208195..11209819)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280832 Neighboring gene calvin cycle protein CP12-1, chloroplastic Neighboring gene uncharacterized LOC4323900 Neighboring gene outer envelope pore protein 16-2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acidic endochitinase SE2
    Names
    B1146F03.32
    Os01g0303100
    P0035H10.19
    putative class III chitinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      11235063..11236280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789371.3 → XP_015644857.1  acidic endochitinase SE2

      UniProtKB/TrEMBL
      A0A0P0V1L6, A0A9K3Y777, Q0JND3, Q657I8, Q9FP24
      Conserved Domains (1) summary
      cd02877
      Location:51 → 333
      GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    Nucleotide Protein
    Heading Accession and Version

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