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    LOC4344515 polyadenylate-binding protein-interacting protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344515, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344515
    Gene description
    polyadenylate-binding protein-interacting protein 11
    Locus tag
    OSNPB_080116400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsRBP37
    Expression
    Ubiquitous expression in flowers (RPKM 40.7), flower buds (RPKM 40.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (904155..910265, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (892920..899068, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable BOI-related E3 ubiquitin-protein ligase 2 Neighboring gene NAC domain-containing protein 43 Neighboring gene large ribosomal subunit protein P1 Neighboring gene intermembrane lipid transfer protein VPS13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein-interacting protein 11
    Names
    Os08g0116400
    P0470F10.8-1
    P0470F10.8-2
    RNA-binding protein
    putative RNA-binding protein RBP37

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      904155..910265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303471.1 → XP_066159568.1  polyadenylate-binding protein-interacting protein 11 isoform X2

      UniProtKB/TrEMBL
      B8BAF8

    2. XM_015794573.3 → XP_015650059.1  polyadenylate-binding protein-interacting protein 11 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XBE7, A0A8J8YJ31, B8BAF8, B9FYR9, Q69UJ1
      Conserved Domains (3) summary
      pfam07145
      Location:33 → 47
      PAM2; Ataxin-2 C-terminal region
      cd12459
      Location:115 → 194
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:210 → 291
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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