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    LOC4328431 peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328431, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328431
    Gene description
    peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic
    Locus tag
    OSNPB_020168700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328431 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3720257..3722511, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3711163..3713535, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 23 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 Neighboring gene porphobilinogen deaminase, chloroplastic-like Neighboring gene uncharacterized protein C12B10.15c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic
    Names
    Os02g0168700
    P0669G09.14
    putative immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409343.1 → NP_001396272.1  peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK061562, CI030161, CI757375, CI759100
      UniProtKB/TrEMBL
      A0A0P0VF60, B8AII0, Q0E3K8, Q6H6D3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3720257..3722511 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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