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    LOC4327881 pentatricopeptide repeat-containing protein At4g32450, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327881, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327881
    Gene description
    pentatricopeptide repeat-containing protein At4g32450, mitochondrial
    Locus tag
    OSNPB_010737900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327881 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31379023..31382358)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30779398..30783040)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 3'-5' exonuclease Neighboring gene protein farnesyltransferase subunit beta Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene ubiquitin-like-specific protease 1D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g32450, mitochondrial
    Names
    OSJNBb0021A09.21
    Os01g0737900
    selenium-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31379023..31382358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766955.3 → XP_015622441.1  pentatricopeptide repeat-containing protein At4g32450, mitochondrial

      UniProtKB/TrEMBL
      A2WUV3, A2ZXM0, Q8S2J3
      Conserved Domains (3) summary
      PLN03081
      Location:415 → 796
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]
      cl11081
      Location:133 → 302
      dermokine

    RNA

    1. XR_001542720.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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