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    LOC4342960 UPF0235 protein At5g63440 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342960, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342960
    Gene description
    UPF0235 protein At5g63440
    Locus tag
    OSNPB_070295200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 19.9), roots after flowering (RPKM 19.2) and 6 other tissues See more
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    Genomic context

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    See LOC4342960 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11605175..11609353, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11513942..11518202, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g15970 Neighboring gene S-adenosylmethionine carrier 1, chloroplastic/mitochondrial Neighboring gene nuclear pore complex protein NUP54 Neighboring gene uncharacterized LOC4342962

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0235 protein At5g63440
    Names
    B1120F06.133
    Os07g0295200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11605175..11609353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789163.3 → XP_015644649.1  UPF0235 protein At5g63440 isoform X2

      Conserved Domains (1) summary
      pfam02594
      Location:102 → 170
      DUF167; uncharacterized ACR, YggU family COG1872

    2. XM_015789162.3 → XP_015644648.1  UPF0235 protein At5g63440 isoform X1

      UniProtKB/TrEMBL
      B8B588, B9FWQ5, Q6YVE5
      Conserved Domains (1) summary
      pfam02594
      Location:144 → 215
      DUF167; Uncharacterized ACR, YggU family COG1872
    Nucleotide Protein
    Heading Accession and Version

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