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    LOC4344218 tubby-like F-box protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344218, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344218
    Gene description
    tubby-like F-box protein 11
    Locus tag
    OSNPB_070667000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TULP7; OsTLP7; TULP11; OsTLP11; OsJ_25493
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    Genomic context

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    See LOC4344218 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28401042..28404587)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28173005..28176807)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein NETWORKED 3C Neighboring gene sodium/hydrogen exchanger 1-like Neighboring gene inactive beta-amylase 9 Neighboring gene homeobox-leucine zipper protein HDG12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby-like F-box protein 11
    Names
    F-box and tubby domain-containing protein
    LOC_Os07g47110
    P0450A04.125
    Tubby-like F-box protein 7
    putative tubby related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423009.1 → NP_001409938.1  tubby-like F-box protein 11

      Status: VALIDATED

      Source sequence(s)
      AK060587, AU068695, CI100958
      UniProtKB/Swiss-Prot
      A0A0P0XA31, A3BN69, B7E558, Q8H485
      UniProtKB/TrEMBL
      B8B5W0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28401042..28404587
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789223.3 → XP_015644709.1  tubby-like F-box protein 11 isoform X1

      Conserved Domains (2) summary
      pfam00646
      Location:53 → 98
      F-box; F-box domain
      pfam01167
      Location:118 → 406
      Tub; Tub family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H485.1 GenPept UniProtKB/Swiss-Prot:Q8H485

    Gene LinkOut

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