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    LOC4329687 calmodulin-binding protein 60 D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329687, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329687
    Gene description
    calmodulin-binding protein 60 D
    Locus tag
    OSNPB_020562300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 115.7), leaves after flowering (RPKM 94.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21800078..21805271)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21319930..21325121)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase EL5-like Neighboring gene DNA repair protein XRCC3 homolog Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene MLO-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of salicylic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding protein 60 D
    Names
    Os02g0562300
    P0435E12.42
    putative calmodulin-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21800078..21805271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769970.2 → XP_015625456.1  calmodulin-binding protein 60 D isoform X1

      UniProtKB/TrEMBL
      B8ADY6
      Conserved Domains (2) summary
      pfam07887
      Location:101 → 396
      Calmodulin_bind; Calmodulin binding protein-like
      pfam11670
      Location:402 → 480
      MSP1a; Major surface protein 1a (MSP1a)

    2. XM_015769972.2 → XP_015625458.1  calmodulin-binding protein 60 D isoform X2

      UniProtKB/TrEMBL
      B8ADY6, B9F0L0, Q0E0C3, Q6YU05
      Conserved Domains (1) summary
      pfam07887
      Location:101 → 393
      Calmodulin_bind; Calmodulin binding protein-like

    3. XM_066307147.1 → XP_066163244.1  calmodulin-binding protein 60 D isoform X1

      UniProtKB/TrEMBL
      B8ADY6

    4. XM_066307148.1 → XP_066163245.1  calmodulin-binding protein 60 D isoform X2

      UniProtKB/TrEMBL
      B8ADY6, B9F0L0, Q0E0C3, Q6YU05
    Nucleotide Protein
    Heading Accession and Version

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