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    LOC4340083 early nodulin-93 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340083, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340083
    Gene description
    early nodulin-93
    Locus tag
    OSNPB_060142200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsENOD93a
    Expression
    Biased expression in milk grains (RPKM 61.3), mature seeds (RPKM 49.9) and 2 other tissues See more
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    Genomic context

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    See LOC4340083 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2356768..2357874, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2199339..2200562, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340081 Neighboring gene uncharacterized LOC4340082 Neighboring gene early nodulin-93 Neighboring gene early nodulin-93

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation, analysis and expression of homologues of the soybean early nodulin gene GmENOD93 (GmN93) from rice. Reddy PM, et al. Biochim Biophys Acta, 1998 Dec 22. PMID 9878846
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    early nodulin-93
    Names
    Os06g0142200
    P0535G04.15-1
    early nodulin
    putative early nodulin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2356768..2357874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787717.3 → XP_015643203.1  early nodulin-93

      UniProtKB/TrEMBL
      A0A5S6RDN3, A2Y945, A3B8A0, O82787, Q0DEP3
      Conserved Domains (1) summary
      pfam03386
      Location:12 → 89
      ENOD93; Early nodulin 93 ENOD93 protein
    Nucleotide Protein
    Heading Accession and Version

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