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    LOC4334836 pentatricopeptide repeat-containing protein At5g46580, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334836, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4334836
    Gene description
    pentatricopeptide repeat-containing protein At5g46580, chloroplastic
    Locus tag
    OSNPB_030856100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 69.7), leaves after flowering (RPKM 55.9) and 6 other tissues See more
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    Genomic context

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    See LOC4334836 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36107010..36111996)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein RADIALIS-like 3 Neighboring gene S-norcoclaurine synthase 1 Neighboring gene uncharacterized LOC107278565 Neighboring gene ATP-dependent DNA helicase 2 subunit KU80-like Neighboring gene acyl carrier protein 3, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g46580, chloroplastic
    Names
    Os03g0856100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      36107010..36111996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775649.2 → XP_015631135.1  pentatricopeptide repeat-containing protein At5g46580, chloroplastic

      UniProtKB/TrEMBL
      B8ANR5
      Conserved Domains (4) summary
      PLN03218
      Location:197 → 500
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:386 → 412
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:171 → 216
      PPR_2; PPR repeat family
      cl02619
      Location:601 → 668
      Smr; Smr domain
    Nucleotide Protein
    Heading Accession and Version

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