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    LOC4344498 uncharacterized LOC4344498 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344498, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344498
    Gene description
    uncharacterized LOC4344498
    Locus tag
    OSNPB_080113200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip113
    Expression
    Ubiquitous expression in flower buds (RPKM 21.7), leaves before flowering (RPKM 21.0) and 6 other tissues See more
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    Genomic context

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    See LOC4344498 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (710234..719387, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (704673..713859, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene peroxidase 47 Neighboring gene fructokinase-2-like Neighboring gene E3 ubiquitin-protein ligase CHIP Neighboring gene probable methyltransferase At1g29790

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344498
    Names
    BRI1-KD interacting protein 113
    Os08g0113200
    P0498H04.30
    putative RNA recognition motif (RRM)-containing protein
    squamous cell carcinoma antigen recognized by T-cells 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      710234..719387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795067.3 → XP_015650553.1  uncharacterized protein LOC4344498

      UniProtKB/TrEMBL
      A2YQL5, Q0J8G3, Q6ZCC0
      Conserved Domains (2) summary
      smart00360
      Location:674 → 745
      RRM; RNA recognition motif
      COG5107
      Location:69 → 583
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

    2. XM_015795068.3 → XP_015650554.1  uncharacterized protein LOC4344498

      UniProtKB/TrEMBL
      A2YQL5, Q0J8G3, Q6ZCC0
      Conserved Domains (2) summary
      smart00360
      Location:674 → 745
      RRM; RNA recognition motif
      COG5107
      Location:69 → 583
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

    RNA

    1. XR_010734515.1 RNA Sequence

    2. XR_010734516.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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