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    LOC4346140 plant-specific TFIIB-related protein PTF2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346140, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346140
    Gene description
    plant-specific TFIIB-related protein PTF2
    Locus tag
    OSNPB_080532500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os08g0532600
    Expression
    Ubiquitous expression in roots before flowering (RPKM 2.7), mature seeds (RPKM 1.7) and 6 other tissues See more
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    Genomic context

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    See LOC4346140 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26689901..26696838)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26543064..26550118)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2-like Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4 Neighboring gene peroxidase 55 Neighboring gene non-specific lipid transfer protein GPI-anchored 1 Neighboring gene transmembrane emp24 domain-containing protein p24beta2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TFIIB-Related Protein BRP5/PTF2 Is Required for Both Male and Female Gametogenesis and for Grain Formation in Rice. Chen G, et al. Int J Mol Sci, 2023 Nov 18. PMID 38003663, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TFIIB-Related Protein BRP5/PTF2 Is Required for Both Male and Female Gametogenesis and for Grain Formation in Rice.
      Title: TFIIB-Related Protein BRP5/PTF2 Is Required for Both Male and Female Gametogenesis and for Grain Formation in Rice.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    plant-specific TFIIB-related protein PTF2
    Names
    Os08g0532500
    P0702E04.20-1
    P0702E04.20-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26689901..26696838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303448.1 → XP_066159545.1  plant-specific TFIIB-related protein PTF2

      UniProtKB/TrEMBL
      A0A0N7KQ72, Q6YZD8

    2. XM_066303447.1 → XP_066159544.1  plant-specific TFIIB-related protein PTF2

      UniProtKB/TrEMBL
      A0A0N7KQ72, Q6YZD8

    3. XM_066303449.1 → XP_066159546.1  plant-specific TFIIB-related protein PTF2

      UniProtKB/TrEMBL
      A0A0N7KQ72, Q6YZD8

    4. XM_066303450.1 → XP_066159547.1  plant-specific TFIIB-related protein PTF2

      UniProtKB/TrEMBL
      A0A0N7KQ72, Q6YZD8
    Nucleotide Protein
    Heading Accession and Version

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