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    LOC4326682 protein SGT1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326682, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326682
    Gene description
    protein SGT1 homolog
    Locus tag
    OSNPB_010624500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SGT1; OsSGT1; OsJ_02663
    Expression
    Ubiquitous expression in roots after flowering (RPKM 122.2), leaves after flowering (RPKM 103.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326682 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25516360..25521487)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24937656..24942887)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene neutral ceramidase-like Neighboring gene late embryogenesis abundant protein Lea14-A Neighboring gene WRKY transcription factor 22 Neighboring gene kinesin-like protein KIN-13B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants. Umemura K, et al. Plant J, 2009 Feb. PMID 18826428
    2. Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex. Yamamoto T, et al. Biochem Biophys Res Commun, 2004 Feb 6. PMID 14733924
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-folding chaperone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SGT1 homolog
    Names
    LOC_Os01g43540
    Suppressor of G2 allele of SKP1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398280.1 → NP_001385209.1  protein SGT1 homolog

      Status: VALIDATED

      Source sequence(s)
      AK059268, AU091386, CB657723
      UniProtKB/Swiss-Prot
      Q0JL44, Q9SE32
      UniProtKB/TrEMBL
      B8ABY6
      Conserved Domains (2) summary
      PLN03088
      Location:5 → 367
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:6 → 34
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25516360..25521487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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