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    LOC4337048 peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337048, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4337048
    Gene description
    peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like
    Locus tag
    OSNPB_040623500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLO3; OsGLO3; OsJ_16217
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    Genomic context

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    See LOC4337048 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32196401..32200276)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31688638..31692592)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene polyamine oxidase 3-like Neighboring gene exonuclease DPD1, chloroplastic/mitochondrial Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase - glycolate oxidase pseudogene Neighboring gene uncharacterized LOC124544570 Neighboring gene signal recognition particle 14 kDa protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (S)-2-hydroxy-acid oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycolate oxidase 3
    Names
    GOX 3
    Glycolate oxidase 3
    LOC_Os04g53210
    OSJNBa0053K19.8
    Short chain alpha-hydroxy acid oxidase GLO3
    peroxisomal (S)-2-hydroxy-acid oxidase GLO3
    NP_001406818.1
    NP_001406819.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419889.1 → NP_001406818.1  glycolate oxidase 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK060221, CF276392, CI141681, CI260222
      UniProtKB/Swiss-Prot
      A0A0P0WEZ5, B7E4S4, B8AUI3, Q01KC3, Q7FAS1

    2. NM_001419890.1 → NP_001406819.1  glycolate oxidase 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK060221, CF276392, CI141681, CI260222

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32196401..32200276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7FAS1.1 GenPept UniProtKB/Swiss-Prot:Q7FAS1

    Gene LinkOut

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    Research Materials