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    LOC4323925 protein VTE6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323925, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4323925
    Gene description
    protein VTE6, chloroplastic
    Locus tag
    OSNPB_010728900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0435H01.7; Os01g0728900
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 11.8), roots after flowering (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    See LOC4323925 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30996186..31002713)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30392744..30405556)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene oil body-associated protein 2B Neighboring gene uncharacterized LOC136351246 Neighboring gene uncharacterized LOC107279228 Neighboring gene receptor like protein 29 Neighboring gene uncharacterized LOC4323928 Neighboring gene uncharacterized LOC4323929

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein VTE6, chloroplastic
    Names
    Os01g0729100
    P0456A01.24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30996186..31002713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020729.2 → XP_025876514.1  protein VTE6, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A2WUQ4
      Conserved Domains (1) summary
      pfam01940
      Location:79 → 303
      DUF92; Integral membrane protein DUF92

    2. XM_015759220.3 → XP_015614706.1  protein VTE6, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0V7Q5, Q5JNF8, Q5JNN2
      Conserved Domains (1) summary
      pfam01940
      Location:79 → 303
      DUF92; Integral membrane protein DUF92
    Nucleotide Protein
    Heading Accession and Version

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