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    LOC4346205 putrescine hydroxycinnamoyltransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346205, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346205
    Gene description
    putrescine hydroxycinnamoyltransferase 1-like
    Locus tag
    OSNPB_080543400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0623F08.6; OJ1521_G02.31
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    Genomic context

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    See LOC4346205 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27349110..27351746)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27202214..27204914)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA1 Neighboring gene hydroxycinnamoyltransferase 4 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC4346207

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putrescine hydroxycinnamoyltransferase 1-like
    Names
    Os08g0543400
    putative hydroxyanthranilate hydroxycinnamoyltransferase 2
    shikimate O-hydroxycinnamoyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27349110..27351746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792588.3 → XP_015648074.1  putrescine hydroxycinnamoyltransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A2YXP3
      Conserved Domains (2) summary
      pfam02458
      Location:20 → 446
      Transferase; Transferase family
      cl23789
      Location:24 → 445
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    2. XM_015792591.3 → XP_015648077.1  putrescine hydroxycinnamoyltransferase 1-like isoform X2

      UniProtKB/TrEMBL
      A0A0N7KQ85, A2YXP2, A2YXP3, Q6ZBI7, Q6ZJF3
      Conserved Domains (1) summary
      cl23789
      Location:24 → 437
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    3. XM_015792589.3 → XP_015648075.1  putrescine hydroxycinnamoyltransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A2YXP3
      Conserved Domains (2) summary
      pfam02458
      Location:20 → 446
      Transferase; Transferase family
      cl23789
      Location:24 → 445
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    4. XM_015792592.3 → XP_015648078.1  putrescine hydroxycinnamoyltransferase 1-like isoform X2

      UniProtKB/TrEMBL
      A0A0N7KQ85, A2YXP2, A2YXP3, Q6ZBI7, Q6ZJF3
      Conserved Domains (1) summary
      cl23789
      Location:24 → 437
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    5. XM_015792590.3 → XP_015648076.1  putrescine hydroxycinnamoyltransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A2YXP3
      Conserved Domains (2) summary
      pfam02458
      Location:20 → 446
      Transferase; Transferase family
      cl23789
      Location:24 → 445
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    6. XM_015792593.3 → XP_015648079.1  putrescine hydroxycinnamoyltransferase 1-like isoform X2

      UniProtKB/TrEMBL
      A0A0N7KQ85, A2YXP2, A2YXP3, Q6ZBI7, Q6ZJF3
      Conserved Domains (1) summary
      cl23789
      Location:24 → 437
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
    Nucleotide Protein
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