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    LOC4342550 heat stress transcription factor A-2b-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342550, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342550
    Gene description
    heat stress transcription factor A-2b-like
    Locus tag
    OSNPB_070178600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HS1; HSF5; HSF18; rHsf5; HSFA2B; OsHsf-18; OsJ_022374; OJ1361_E02.115
    Expression
    Ubiquitous expression in mature seeds (RPKM 4.1), flower buds (RPKM 2.3) and 6 other tissues See more
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    Genomic context

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    See LOC4342550 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4199563..4202840)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4139163..4142445)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939549 Neighboring gene uncharacterized LOC136357356 Neighboring gene ETO1-like protein 1 Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor. Liu JG, et al. BMB Rep, 2009 Jan 31. PMID 19192388
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor A-2b
    Names
    Heat stress transcription factor 18
    Heat stress transcription factor 5
    LOC_Os07g08140
    heat shock factor RHSF5
    heat stress protein
    putative heat shock transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403026.1 → NP_001389955.1  heat stress transcription factor A-2b

      Status: VALIDATED

      Source sequence(s)
      AK101824, AU030887, CI063523, CI307967, CI612443
      UniProtKB/Swiss-Prot
      A0A0P0X300, Q6VBB2, Q7XBH0
      UniProtKB/TrEMBL
      A2YIQ6, A8Y7N1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4199563..4202840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6VBB2.1 GenPept UniProtKB/Swiss-Prot:Q6VBB2

    Gene LinkOut

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