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    LOC9270328 patatin-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270328, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270328
    Gene description
    patatin-like protein 1
    Locus tag
    OSNPB_110614500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 2.0), flowers (RPKM 1.2) and 5 other tissues See more
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    Genomic context

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    See LOC9270328 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25803239..25812210)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23852012..23860881)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354255 Neighboring gene patatin-like protein 1 Neighboring gene patatin-like protein 3 Neighboring gene cyclin-dependent kinase inhibitor 3-like Neighboring gene uncharacterized LOC136353871

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acylglycerol lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    patatin-like protein 1
    Names
    Os11g0614500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25803239..25812210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305640.1 → XP_066161737.1  patatin-like protein 1 isoform X1

    2. XM_066305641.1 → XP_066161738.1  patatin-like protein 1 isoform X1

    3. XM_066305642.1 → XP_066161739.1  patatin-like protein 1 isoform X2

    4. XM_066305643.1 → XP_066161740.1  patatin-like protein 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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