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    LOC4333004 protein LNK1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333004, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333004
    Gene description
    protein LNK1
    Locus tag
    OSNPB_030387900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 129.9), leaves after flowering (RPKM 69.5) and 6 other tissues See more
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    Genomic context

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    See LOC4333004 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15820267..15826000)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15467834..15473828)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271829 Neighboring gene uncharacterized LOC4333003 Neighboring gene serine/arginine-rich splicing factor SC35 Neighboring gene copper-transporting ATPase PAA1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LNK1
    Names
    Os03g0387900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15820267..15826000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775863.3 → XP_015631349.1  protein LNK1 isoform X1

      UniProtKB/TrEMBL
      B9F8S5, Q0DRG2, Q10KE5

    2. XM_015775870.3 → XP_015631356.1  protein LNK1 isoform X5

      UniProtKB/TrEMBL
      B9F8S5

    3. XM_015775871.3 → XP_015631357.1  protein LNK1 isoform X7

      UniProtKB/TrEMBL
      B9F8S5

    4. XM_015775869.3 → XP_015631355.1  protein LNK1 isoform X3

      UniProtKB/TrEMBL
      B9F8S5, Q10KE4

    5. XM_015775872.3 → XP_015631358.1  protein LNK1 isoform X9

      UniProtKB/TrEMBL
      B9F8S5

    6. XM_015775873.3 → XP_015631359.1  protein LNK1 isoform X10

      UniProtKB/TrEMBL
      B9F8S5

    7. XM_015775867.3 → XP_015631353.1  protein LNK1 isoform X2

      UniProtKB/TrEMBL
      B9F8S5, Q10KE3

    8. XM_066308337.1 → XP_066164434.1  protein LNK1 isoform X6

    9. XM_066308340.1 → XP_066164437.1  protein LNK1 isoform X8

    10. XM_066308334.1 → XP_066164431.1  protein LNK1 isoform X4

    11. XM_066308344.1 → XP_066164441.1  protein LNK1 isoform X11

    12. XM_015775864.3 → XP_015631350.1  protein LNK1 isoform X1

      UniProtKB/TrEMBL
      B9F8S5, Q0DRG2, Q10KE5

    13. XM_066308336.1 → XP_066164433.1  protein LNK1 isoform X5

    14. XM_066308339.1 → XP_066164436.1  protein LNK1 isoform X7

    15. XM_066308333.1 → XP_066164430.1  protein LNK1 isoform X3

    16. XM_066308342.1 → XP_066164439.1  protein LNK1 isoform X9

    17. XM_066308343.1 → XP_066164440.1  protein LNK1 isoform X10

    18. XM_015775868.3 → XP_015631354.1  protein LNK1 isoform X2

      UniProtKB/TrEMBL
      B9F8S5, Q10KE3

    19. XM_066308338.1 → XP_066164435.1  protein LNK1 isoform X6

    20. XM_066308341.1 → XP_066164438.1  protein LNK1 isoform X8

    21. XM_066308335.1 → XP_066164432.1  protein LNK1 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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