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    LOC4344508 endoglucanase 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344508, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344508
    Gene description
    endoglucanase 19-like
    Locus tag
    OSNPB_080114200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 1.2), flower buds (RPKM 0.5) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (773476..775342)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (763102..765375)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene probable L-gulonolactone oxidase 4 Neighboring gene protein IQ-DOMAIN 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice. Zhang J, et al. Plant Signal Behav, 2012 Sep 1. PMID 22899054, Free PMC Article
    2. OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.). Zhang JW, et al. Mol Plant, 2012 Jan. PMID 21976713
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsGLU3 is also dispensable for nitrogen starvation induced root elongation in rice.
      Title: Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice.
    2. GLU3 is a putative membrane-bound endo-1,4-beta-glucanase and is required for root cell elongation and division.
      Title: OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endoglucanase 19
    Names
    Endo-1,4-beta glucanase 19
    LOC_Os08g02220
    P0427G12.14
    putative endoglucanase 1 precursor (Endo-1,4-beta-glucanase) (Abscission cellulase 1)
    NP_001409815.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422886.1 → NP_001409815.1  endoglucanase 19 precursor

      Status: VALIDATED

      Source sequence(s)
      AK106851
      UniProtKB/Swiss-Prot
      A0A0P0XB73, Q0J8F3, Q6YXT7
      UniProtKB/TrEMBL
      A2YQM3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      773476..775342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YXT7.1 GenPept UniProtKB/Swiss-Prot:Q6YXT7

    Gene LinkOut

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