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    LOC4325497 protein CROWDED NUCLEI 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325497, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325497
    Gene description
    protein CROWDED NUCLEI 4
    Locus tag
    OSNPB_010767000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NMCP1; NMCP1B; OsNMCP1; OsNMCP1b; OsJ_03582; B1143G03.1
    Expression
    Ubiquitous expression in roots after flowering (RPKM 51.8), leaves after flowering (RPKM 41.9) and 6 other tissues See more
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    Genomic context

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    See LOC4325497 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32932997..32937931, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32327820..32333022, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 1-like Neighboring gene probable xyloglucan glycosyltransferase 1 Neighboring gene uncharacterized LOC4325498 Neighboring gene transfer RNA threonine (anticodon AGU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice. Yang J, et al. New Phytol, 2020 Jul. PMID 32129897
    2. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    3. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
      Title: A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nucleus organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear matrix constituent protein 1b
    Names
    LOC_Os01g56140
    Nuclear matrix constituent protein 1
    Nuclear matrix constituent protein 1b
    OSJNBb0053G03.15
    Os01g0767000
    nuclear matrix constituent-like protein
    putative nuclear matrix constituent protein 1 (NMCP1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397721.1 → NP_001384650.1  nuclear matrix constituent protein 1b

      Status: VALIDATED

      Source sequence(s)
      AB110205, AU108247
      UniProtKB/Swiss-Prot
      A0A0P0V8N9, Q0JJ05, Q8LIX8
      UniProtKB/TrEMBL
      A2WVG1
      Conserved Domains (1) summary
      TIGR02168
      Location:48 → 726
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32932997..32937931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JJ05.1 GenPept UniProtKB/Swiss-Prot:Q0JJ05

    Gene LinkOut

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