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    LOC4340087 protein HEADING DATE 3B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340087, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340087
    Gene description
    protein HEADING DATE 3B-like
    Locus tag
    OSNPB_060142600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Ef7; HD3B; Hd-q; Hd17; ELF3-1; OsELF3; OsELF3-1; OsJ_20086
    Expression
    Broad expression in roots after flowering (RPKM 40.4), leaves after flowering (RPKM 28.1) and 6 other tissues See more
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    Genomic context

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    See LOC4340087 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2391704..2396688, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2234155..2239184, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene early nodulin-93 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC136356953 Neighboring gene probable receptor-like protein kinase At5g20050 Neighboring gene putative cytochrome c oxidase subunit 5b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of photoperiodism, flowering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HEADING DATE 3B
    Names
    ELF3-like protein
    ELF3-like protein 1
    LOC_Os06g05060
    Os06g0142600
    P0535G04.25
    Protein HEADING DATE 17
    Protein HEADING DATE 3B
    protein EARLY FLOWERING 3
    putative early flowering 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421069.1 → NP_001407998.1  protein HEADING DATE 3B

      Status: VALIDATED

      Source sequence(s)
      AK242105, AP014962, CI301921, CI568448
      UniProtKB/Swiss-Prot
      Q0DEN9, Q9SNQ6
      UniProtKB/TrEMBL
      A0A067Y1W5, H3K2J8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2391704..2396688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SNQ6.1 GenPept UniProtKB/Swiss-Prot:Q9SNQ6

    Gene LinkOut

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