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    LOC4341715 F-box protein AFR [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341715, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341715
    Gene description
    F-box protein AFR
    Locus tag
    OSNPB_060655500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341715 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27741350..27743154, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26877108..26879021, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pollen allergen Lol p 2-A Neighboring gene uncharacterized LOC136357098 Neighboring gene (R)-mandelonitrile lyase-like Neighboring gene CASP-like protein 2C1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein AFR
    Names
    F-box domain and kelch repeat containing protein FBK17
    Os06g0655500
    P0460H04.11-1
    P0709F06.32-1
    kelch repeat containing F-box protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27741350..27743154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788848.3 → XP_015644334.1  F-box protein AFR

      UniProtKB/TrEMBL
      A0A0P0WZV0, B9FQA2, Q67W96
      Conserved Domains (3) summary
      smart00612
      Location:139 → 186
      Kelch; Kelch domain
      sd00038
      Location:176 → 264
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:32 → 67
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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