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    LOC4331034 uncharacterized LOC4331034 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331034, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331034
    Gene description
    uncharacterized LOC4331034
    Locus tag
    OSNPB_020800000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 140.6), leaves after flowering (RPKM 94.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331034 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34567286..34571760)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34071033..34075513)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331033 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene cyclin-B1-2-like Neighboring gene uncharacterized protein Os02g0798501-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331034
    Names
    OSJNBa0032L17.6
    Os02g0800000
    P-loop guanosine triphosphatase YjiA
    PRLI-interacting factor L-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34567286..34571760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771090.3 → XP_015626576.1  uncharacterized protein LOC4331034

      UniProtKB/TrEMBL
      A0A0P0VQU7, B8AED8, Q69IK7
      Conserved Domains (1) summary
      COG0523
      Location:90 → 445
      YejR; GTPase, G3E family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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