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    LOC101927159 uncharacterized LOC101927159 [ Homo sapiens (human) ]

    Gene ID: 101927159, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927159
    Gene description
    uncharacterized LOC101927159
    See related
    Ensembl:ENSG00000229042
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927159 in Genome Data Viewer
    Location:
    20q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (42685483..42688562)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (44417326..44420400)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (41314123..41317202)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927182 Neighboring gene uncharacterized LOC105372622 Neighboring gene MPRA-validated peak4218 silencer Neighboring gene protein tyrosine phosphatase receptor type T Neighboring gene MPRA-validated peak4219 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:40834580-40835212 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:40937504-40938187 Neighboring gene uncharacterized LOC105372624 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:41379572-41380771 Neighboring gene uncharacterized LOC124904981 Neighboring gene uncharacterized LOC105372623

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110004.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC040166
      Related
      ENST00000457704.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      42685483..42688562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      44417326..44420400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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