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    TMEM202-AS1 TMEM202 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105370888, updated on 26-Oct-2024

    Summary

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    Official Symbol
    TMEM202-AS1provided by HGNC
    Official Full Name
    TMEM202 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:53265
    See related
    AllianceGenome:HGNC:53265
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 4.5), ovary (RPKM 0.3) and 4 other tissues See more
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    Genomic context

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    See TMEM202-AS1 in Genome Data Viewer
    Location:
    15q24.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (72407779..72474239, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (70225110..70291502, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (72700120..72766580, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:72668147-72668703 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9721 Neighboring gene HEXA antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 35 Neighboring gene transmembrane protein 202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:72743763-72744262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9722 Neighboring gene PHB1 pseudogene 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9723 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:72766566-72766762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9724 Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6625 Neighboring gene MPRA-validated peak2380 silencer Neighboring gene SWI5 recombination repair homolog (yeast) pseudogene Neighboring gene microRNA 630

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135678.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079322, BI520439, HY009381

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      72407779..72474239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      70225110..70291502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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