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    Aadacl2fm1 AADACL2 family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 229333, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Aadacl2fm1provided by MGI
    Official Full Name
    AADACL2 family member 1provided by MGI
    Primary source
    MGI:MGI:3028051
    See related
    Ensembl:ENSMUSG00000036951 AllianceGenome:MGI:3028051
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C130079G13Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Aadacl2fm1 in Genome Data Viewer
    Location:
    3 D; 3 29.11 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (59832635..59845370)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (59925214..59937949)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 16527 Neighboring gene predicted gene 2756 Neighboring gene AADACL2 family member 3 Neighboring gene STARR-seq mESC enhancer starr_07771 Neighboring gene arylacetamide deacetylase-like 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_07773 Neighboring gene arylacetamide deacetylase like 2 Neighboring gene crumbs homolog 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC229333

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177661.3 → NP_808329.1  uncharacterized protein LOC229333

      See identical proteins and their annotated locations for NP_808329.1

      Status: PREDICTED

      Source sequence(s)
      AK081819
      Consensus CDS
      CCDS38441.1
      UniProtKB/TrEMBL
      Q8BUY2
      Related
      ENSMUSP00000047032.3, ENSMUST00000049476.3
      Conserved Domains (2) summary
      COG0657
      Location:4 → 267
      Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
      pfam07859
      Location:4 → 251
      Abhydrolase_3; alpha/beta hydrolase fold

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      59832635..59845370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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