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    LOC105374989 uncharacterized LOC105374989 [ Homo sapiens (human) ]

    Gene ID: 105374989, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC105374989
    Gene description
    uncharacterized LOC105374989
    See related
    Ensembl:ENSG00000275846
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.7) See more
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    Genomic context

    See LOC105374989 in Genome Data Viewer
    Location:
    6p22.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26602733..26606661)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26471168..26475093)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26602961..26606889)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24250 Neighboring gene tRNA-Tyr (anticodon GTA) 6-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24251 Neighboring gene activator of basal transcription 1 Neighboring gene vomeronasal 1 receptor 14 pseudogene Neighboring gene zinc finger protein 322 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26659404-26659904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26659905-26660405

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187833.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL513548
      Related
      ENST00000611708.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      26602733..26606661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791780.1 Reference GRCh38.p14 PATCHES

      Range
      148931..152857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      26471168..26475093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)