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    LINC01555 long intergenic non-protein coding RNA 1555 [ Homo sapiens (human) ]

    Gene ID: 439927, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01555provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1555provided by HGNC
    Primary source
    HGNC:HGNC:26647
    See related
    Ensembl:ENSG00000180869 AllianceGenome:HGNC:26647
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf180
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01555 in Genome Data Viewer
    Location:
    1p22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (84628230..84635020, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (84468605..84475402, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (85093913..85100703, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378819 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:85044029-85044228 Neighboring gene long intergenic non-protein coding RNA 1461 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1022 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1023 Neighboring gene uncharacterized LOC124904206 Neighboring gene SSX family member 2 interacting protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1024 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:85222320-85222891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:85240543-85241042 Neighboring gene uncharacterized LOC102724892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1258

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Repression of linc01555 up-regulates angiomotin-p130 via the microRNA-122-5p/clic1 axis to impact vasculogenic mimicry-mediated chemotherapy resistance in small cell lung cancer. Li D, et al. Cell Cycle, 2023 Jan. PMID 36045598, Free PMC Article
    2. Linc01555 promotes proliferation, migration and invasion of gastric carcinoma cells by interacting with Notch signaling pathway. Zhao X, et al. J BUON, 2020 Mar-Apr. PMID 32521899
    3. The Long Noncoding RNA, LINC01555, Promotes Invasion and Metastasis of Colorectal Cancer by Activating the Neuropeptide, Neuromedin U. Wang X, et al. Med Sci Monit, 2019 May 30. PMID 31144675, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Repression of linc01555 up-regulates angiomotin-p130 via the microRNA-122-5p/clic1 axis to impact vasculogenic mimicry-mediated chemotherapy resistance in small cell lung cancer.
      Title: Repression of linc01555 up-regulates angiomotin-p130 via the microRNA-122-5p/clic1 axis to impact vasculogenic mimicry-mediated chemotherapy resistance in small cell lung cancer.
    2. Linc01555 promotes proliferation, migration and invasion of gastric carcinoma cells by interacting with Notch signaling pathway.
      Title: Linc01555 promotes proliferation, migration and invasion of gastric carcinoma cells by interacting with Notch signaling pathway.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Clone Names

    • FLJ35487, MGC168982, MGC168983

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027379.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC114482, AK092806
      Related
      ENST00000370624.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      84628230..84635020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      84468605..84475402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033660.1: Suppressed sequence

      Description
      NM_001033660.1: This RefSeq was permanently suppressed because it was mostly repetitive sequence.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8NAE3.1 GenPept UniProtKB/Swiss-Prot:Q8NAE3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials