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    LINC01505 long intergenic non-protein coding RNA 1505 [ Homo sapiens (human) ]

    Gene ID: 100996590, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01505provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1505provided by HGNC
    Primary source
    HGNC:HGNC:51186
    See related
    Ensembl:ENSG00000234323 AllianceGenome:HGNC:51186
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01505 in Genome Data Viewer
    Location:
    9q31.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (106616058..106679802)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (118792301..118856029)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (109378339..109442083)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987108 Neighboring gene uncharacterized LOC124902240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28747 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:109218786-109219363 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:109230061-109230757 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:109320403-109321602 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:109356896-109357060 Neighboring gene microRNA 8081 Neighboring gene COP1, E3 ubiquitin ligase pseudogene Neighboring gene RN7SK pseudogene 77

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104145.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK093363, AL512649, CR742970
      Related
      ENST00000444985.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      106616058..106679802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      118792301..118856029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)