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    TEX13A testis expressed 13A [ Homo sapiens (human) ]

    Gene ID: 56157, updated on 27-Nov-2024

    Summary

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    Official Symbol
    TEX13Aprovided by HGNC
    Official Full Name
    testis expressed 13Aprovided by HGNC
    Primary source
    HGNC:HGNC:11735
    See related
    Ensembl:ENSG00000268629 MIM:300312; AllianceGenome:HGNC:11735
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This gene is similar to a mouse gene that is expressed in the testis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
    Expression
    Restricted expression toward testis (RPKM 3.2) See more
    Orthologs
    mouse all
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    Genomic context

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    See TEX13A in Genome Data Viewer
    Location:
    Xq22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (105218929..105220694, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (103650189..103651954, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (104463611..104465378, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor accessory protein like 2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:103921885-103922468 Neighboring gene NANOG hESC enhancer GRCh37_chrX:103934072-103934573 Neighboring gene PHB1 pseudogene 10 Neighboring gene ribosomal protein L18a pseudogene 14 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:104543919-104544655 Neighboring gene NANOG hESC enhancer GRCh37_chrX:104669910-104670411 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 2 Neighboring gene uncharacterized LOC107985680

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Molecular and cytogenetic characterization of two azoospermic patients with X-autosome translocation. Lee S, et al. J Assist Reprod Genet, 2003 Sep. PMID 14531651, Free PMC Article
    2. An abundance of X-linked genes expressed in spermatogonia. Wang PJ, et al. Nat Genet, 2001 Apr. PMID 11279525
    3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
    5. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Tex13a was identified as a spermatagonia-specific gene in mouse.
      Title: An abundance of X-linked genes expressed in spermatogonia.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC131984

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testis-expressed protein 13A
    Names
    testis-expressed sequence 13A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016253.1 RefSeqGene

      Range
      4981..6746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001291277.2 → NP_001278206.1  testis-expressed protein 13A

      See identical proteins and their annotated locations for NP_001278206.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      Z74477
      Consensus CDS
      CCDS76005.1
      UniProtKB/Swiss-Prot
      B1B1G8, Q32NB6, Q9BXU3
      Related
      ENSP00000477478.2, ENST00000609007.3
      Conserved Domains (3) summary
      sd00025
      Location:380 → 399
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:376 → 400
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam15186
      Location:5 → 144
      TEX13; Testis-expressed sequence 13 protein family

    2. NM_031274.5 → NP_112564.1  testis-expressed protein 13A

      See identical proteins and their annotated locations for NP_112564.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      Z74477
      Consensus CDS
      CCDS76005.1
      UniProtKB/Swiss-Prot
      B1B1G8, Q32NB6, Q9BXU3
      Related
      ENSP00000471604.2, ENST00000600991.6
      Conserved Domains (3) summary
      sd00025
      Location:380 → 399
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:376 → 400
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam15186
      Location:5 → 144
      TEX13; Testis-expressed sequence 13 protein family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      105218929..105220694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      103650189..103651954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9BXU3.1 GenPept UniProtKB/Swiss-Prot:Q9BXU3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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