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    LINC00662 long intergenic non-protein coding RNA 662 [ Homo sapiens (human) ]

    Gene ID: 148189, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00662provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 662provided by HGNC
    Primary source
    HGNC:HGNC:27122
    See related
    Ensembl:ENSG00000261824 AllianceGenome:HGNC:27122
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 6.0), ovary (RPKM 2.2) and 25 other tissues See more
    NEW
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    Genomic context

    See LINC00662 in Genome Data Viewer
    Location:
    19q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (27790493..27793940, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (30318288..30321734, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (28281401..28284848, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904678 Neighboring gene NANOG hESC enhancer GRCh37_chr19:24584392-24584893 Neighboring gene NANOG hESC enhancer GRCh37_chr19:24585417-24585918 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:24625458-24626443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:24630995-24631601 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27732451-27733302 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27733303-27734155 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27734156-27735007 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27735098-27735622 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27735920-27736488 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27736489-27737057 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27737089-27737964 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27737965-27738838 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27738839-27739712 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27739713-27740586 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27813523-27814024 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27812477-27813220 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27808230-27808731 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27814077-27814586 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27836954-27837540 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27844808-27845309 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27874272-27875240 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27875298-27875799 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27877672-27878173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27894379-27895360 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27897397-27897916 Neighboring gene uncharacterized LOC105372345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14401 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28286227-28287008 Neighboring gene long intergenic non-protein coding RNA 2987 Neighboring gene solute carrier family 25 member 1 pseudogene 5 Neighboring gene vomeronasal 1 receptor 95 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027301.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK311452, BC045720
      Related
      ENST00000659422.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      27790493..27793940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      30318288..30321734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)