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    Lrrc36 leucine rich repeat containing 36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361394, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Lrrc36provided by RGD
    Official Full Name
    leucine rich repeat containing 36provided by RGD
    Primary source
    RGD:1303118
    See related
    EnsemblRapid:ENSRNOG00000016854 AllianceGenome:RGD:1303118
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Xlhsrf2
    Summary
    Orthologous to human LRRC36 (leucine rich repeat containing 36). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 69.9), Lung (RPKM 38.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lrrc36 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50201944..50252338)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33292074..33342426)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37370469..37439048)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A5 Neighboring gene pleckstrin homology and RhoGEF domain containing G4 Neighboring gene potassium channel tetramerization domain containing 19 Neighboring gene tubulin polymerization-promoting protein family member 3 Neighboring gene zinc finger, DHHC-type containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 36
    Names
    LRRC36 homolog
    heat shock regulated 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004088.3 → NP_001004088.3  leucine-rich repeat-containing protein 36

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A8I6GH65
      Related
      ENSRNOP00000088526.1, ENSRNOT00000022622.7
      Conserved Domains (3) summary
      cd00116
      Location:42 → 107
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:26 → 51
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:26 → 84
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50201944..50252338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063278122.1 → XP_063134192.1  leucine-rich repeat-containing protein 36 isoform X1

    2. XM_063278123.1 → XP_063134193.1  leucine-rich repeat-containing protein 36 isoform X2

    3. XM_063278125.1 → XP_063134195.1  leucine-rich repeat-containing protein 36 isoform X4

    4. XM_063278124.1 → XP_063134194.1  leucine-rich repeat-containing protein 36 isoform X3

    5. XM_039097830.1 → XP_038953758.1  leucine-rich repeat-containing protein 36 isoform X5

    6. XM_039097831.1 → XP_038953759.1  leucine-rich repeat-containing protein 36 isoform X6

    7. XM_039097832.2 → XP_038953760.1  leucine-rich repeat-containing protein 36 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

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