U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam229a family with sequence similarity 229, member A [ Mus musculus (house mouse) ]

    Gene ID: 68233, updated on 28-Oct-2024

    Summary

    Official Symbol
    Fam229aprovided by MGI
    Official Full Name
    family with sequence similarity 229, member Aprovided by MGI
    Primary source
    MGI:MGI:1915483
    See related
    Ensembl:ENSMUSG00000078554 AllianceGenome:MGI:1915483
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700125D06Rik
    Summary
    Orthologous to human FAM229A (family with sequence similarity 229 member A). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward testis adult (RPKM 328.9) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fam229a in Genome Data Viewer
    Location:
    4 D2.2; 4 63.26 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129384983..129385749)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129491190..129491956)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129138525-129138708 Neighboring gene predicted gene, 24621 Neighboring gene BSD domain containing 1 Neighboring gene testis-specific serine kinase 3 Neighboring gene STARR-positive B cell enhancer ABC_E6223 Neighboring gene STARR-seq mESC enhancer starr_11499 Neighboring gene MARCKS-like 1 Neighboring gene histone deacetylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1039

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085491.2NP_001078960.1  protein FAM229A

      See identical proteins and their annotated locations for NP_001078960.1

      Status: VALIDATED

      Source sequence(s)
      AK018987, BY707048, CA465983
      Consensus CDS
      CCDS38885.1
      UniProtKB/Swiss-Prot
      B2KGE5
      Related
      ENSMUSP00000101658.3, ENSMUST00000106043.3
      Conserved Domains (1) summary
      pfam14982
      Location:60123
      UPF0731; UPF0731 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      129384983..129385749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)