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    LOC101927657 uncharacterized LOC101927657 [ Homo sapiens (human) ]

    Gene ID: 101927657, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101927657
    Gene description
    uncharacterized LOC101927657
    See related
    Ensembl:ENSG00000244791
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927657 in Genome Data Viewer
    Location:
    8q24.21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (126325495..126329535)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (127452641..127456681)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (127337740..127341780)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:127105809-127106377 Neighboring gene lysine rich nucleolar protein 1 pseudogene 5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:127155224-127156423 Neighboring gene ret finger protein like 4A pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:127267275-127267436 Neighboring gene NANOG hESC enhancer GRCh37_chr8:127296381-127296887 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:127384477-127385018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:127412538-127413039 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:127422275-127422836 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:127433559-127434060 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:127445690-127446889 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127460795-127461604 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127461605-127462414 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127462415-127463224 Neighboring gene uncharacterized LOC105375750 Neighboring gene RNA, U6 small nuclear 869, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125421.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087667
      Related
      ENST00000500180.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      126325495..126329535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      127452641..127456681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials