U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01134 long intergenic non-protein coding RNA 1134 [ Homo sapiens (human) ]

    Gene ID: 100133612, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC01134provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1134provided by HGNC
    Primary source
    HGNC:HGNC:49449
    See related
    Ensembl:ENSG00000236423 AllianceGenome:HGNC:49449
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TLNC1
    Expression
    Biased expression in testis (RPKM 1.2), small intestine (RPKM 0.3) and 8 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01134 in Genome Data Viewer
    Location:
    1p36.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (3900404..3915447)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (3412308..3427355)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (3816968..3832011)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 67 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 127 Neighboring gene Sharpr-MPRA regulatory region 4254 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:3787529-3787731 Neighboring gene DNA fragmentation factor subunit beta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 128 Neighboring gene chromosome 1 open reading frame 174 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3815928-3816498 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3816499-3817067 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:3817068-3817637 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 130 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:3827787-3828672 Neighboring gene long intergenic non-protein coding RNA 1346 Neighboring gene long intergenic non-protein coding RNA 1345 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4015013-4015738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4017862-4018398 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:4018399-4018934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037314-4037814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4037815-4038315 Neighboring gene long intergenic non-protein coding RNA 2780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:4071131-4071631

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    General gene information

    Markers

    Other Names

    • tumorigenic long noncoding RNA on chromosome 1p13

    Clone Names

    • FLJ26663

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024455.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK130173, BC016994, CR847867
      Related
      ENST00000439488.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      3900404..3915447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      3412308..3427355
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)