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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001142289.3 → NP_001135761.2 E3 ubiquitin-protein ligase MGRN1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AC023830, DA590130, EF471397
- Consensus CDS
-
CCDS59256.1
- UniProtKB/TrEMBL
-
K7EPJ5
- Related
- ENSP00000468819.1, ENST00000588994.5
- Conserved Domains (3) summary
-
- PHA02929
Location:232 → 331
- PHA02929; N1R/p28-like protein; Provisional
- TIGR00599
Location:273 → 449
- rad18; DNA repair protein rad18
- pfam13920
Location:274 → 319
- zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
-
NM_001142290.3 → NP_001135762.1 E3 ubiquitin-protein ligase MGRN1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice junction at the 5' end of the last exon compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AB011116, AC023830, DA590130
- Consensus CDS
-
CCDS45402.1
- UniProtKB/Swiss-Prot
- A4URL3, A4URL4, O60291, Q86W76
- UniProtKB/TrEMBL
-
K7EPJ5
- Related
- ENSP00000382487.4, ENST00000399577.9
- Conserved Domains (2) summary
-
- PHA02929
Location:232 → 331
- PHA02929; N1R/p28-like protein; Provisional
- pfam13920
Location:274 → 319
- zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
-
NM_001142291.3 → NP_001135763.2 E3 ubiquitin-protein ligase MGRN1 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon and uses an alternate splice junction at the 5' end of the last exon compared to variant 1. The resulting isoform (4) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC023830, DA590130, EF471398
- Consensus CDS
-
CCDS45401.2
- UniProtKB/TrEMBL
-
K7EPJ5
- Related
- ENSP00000393311.2, ENST00000415496.5
- Conserved Domains (3) summary
-
- PHA02929
Location:232 → 331
- PHA02929; N1R/p28-like protein; Provisional
- TIGR00599
Location:273 → 449
- rad18; DNA repair protein rad18
- pfam13920
Location:274 → 319
- zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
-
NM_015246.4 → NP_056061.1 E3 ubiquitin-protein ligase MGRN1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC023830, BC050389, DA590130
- Consensus CDS
-
CCDS42115.1
- UniProtKB/TrEMBL
-
K7EPJ5
- Related
- ENSP00000262370.6, ENST00000262370.12
- Conserved Domains (2) summary
-
- cd16789
Location:277 → 317
- mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
- cl27165
Location:232 → 331
- PHA02929; N1R/p28-like protein; Provisional
RNA
-
NR_102267.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC023830, AK299052
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
4624826..4690972
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
4654281..4720424
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)