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    LOC4350238 protein NLP2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350238, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350238
    Gene description
    protein NLP2-like
    Locus tag
    OSNPB_110264300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 50.2), leaves before flowering (RPKM 44.3) and 6 other tissues See more
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    Genomic context

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    See LOC4350238 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (9440962..9448301, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (8970128..8977470, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene laccase-18 Neighboring gene F-box/LRR-repeat protein 12 Neighboring gene uncharacterized LOC4350239 Neighboring gene uncharacterized LOC4350240

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NLP2-like
    Names
    Os11g0264300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      9440962..9448301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761396.3 → XP_015616882.1  protein NLP2-like isoform X2

      UniProtKB/TrEMBL
      Q2R7K5
      Conserved Domains (2) summary
      pfam02042
      Location:548 → 596
      RWP-RK; RWP-RK domain
      cl02720
      Location:775 → 855
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...

    2. XM_015761397.3 → XP_015616883.1  protein NLP2-like isoform X3

      UniProtKB/TrEMBL
      Q53LU1
      Conserved Domains (1) summary
      pfam02042
      Location:548 → 596
      RWP-RK; RWP-RK domain

    3. XM_015761394.3 → XP_015616880.1  protein NLP2-like isoform X1

      UniProtKB/TrEMBL
      Q2R7K6
      Conserved Domains (2) summary
      pfam02042
      Location:548 → 596
      RWP-RK; RWP-RK domain
      cl02720
      Location:803 → 883
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...

    4. XM_066305247.1 → XP_066161344.1  protein NLP2-like isoform X3

    5. XM_015761395.3 → XP_015616881.1  protein NLP2-like isoform X1

      UniProtKB/TrEMBL
      Q2R7K6
      Conserved Domains (2) summary
      pfam02042
      Location:548 → 596
      RWP-RK; RWP-RK domain
      cl02720
      Location:803 → 883
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
    Nucleotide Protein
    Heading Accession and Version

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