U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9267898 protein transport protein yos1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267898, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9267898
    Gene description
    protein transport protein yos1
    Locus tag
    OSNPB_090326850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0706E03.2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 49.7), leaves after flowering (RPKM 47.5) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9267898 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (13962482..13964757)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (9629376..9631724)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351692 Neighboring gene 26S proteasome non-ATPase regulatory subunit 2 homolog A Neighboring gene eukaryotic translation initiation factor 5 Neighboring gene uncharacterized LOC4346743 Neighboring gene ras-related protein RABA1f Neighboring gene pentatricopeptide repeat-containing protein At4g02750

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein transport protein yos1
    Names
    Os09g0326850

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      13962482..13964757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795862.3 → XP_015651348.1  protein transport protein yos1

      UniProtKB/TrEMBL
      A0A0P0XK42, A6MZA3, B9G2X1
      Conserved Domains (1) summary
      pfam08571
      Location:3 → 78
      Yos1; Yos1-like

    2. XM_015795863.3 → XP_015651349.1  protein transport protein yos1

      UniProtKB/TrEMBL
      A0A0P0XK42, A6MZA3, B9G2X1
      Conserved Domains (1) summary
      pfam08571
      Location:3 → 78
      Yos1; Yos1-like

    RNA

    1. XR_010735049.1 RNA Sequence

    2. XR_010735050.1 RNA Sequence

    3. XR_010735048.1 RNA Sequence

    4. XR_010735051.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials