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    LOC4346090 70 kDa peptidyl-prolyl isomerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346090, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346090
    Gene description
    70 kDa peptidyl-prolyl isomerase
    Locus tag
    OSNPB_080525600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1191_A10.119
    Expression
    Ubiquitous expression in mature seeds (RPKM 79.4), roots after flowering (RPKM 49.5) and 6 other tissues See more
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    Genomic context

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    See LOC4346090 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26285117..26289503)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26138472..26142929)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene polyamine transporter PUT1-like Neighboring gene pentatricopeptide repeat-containing protein At5g18390, mitochondrial Neighboring gene uncharacterized LOC4346091 Neighboring gene probable glucan endo-1,3-beta-glucosidase A6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    70 kDa peptidyl-prolyl isomerase
    Names
    Os08g0525600
    putative 70 kDa peptidylprolyl isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26285117..26289503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794631.3 → XP_015650117.1  70 kDa peptidyl-prolyl isomerase

      UniProtKB/TrEMBL
      A0A0P0XID0, B8B8V4, B9G1W2, Q7F1F2
      Conserved Domains (4) summary
      COG0457
      Location:403 → 543
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG0545
      Location:161 → 267
      FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
      sd00006
      Location:408 → 437
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:57 → 149
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version

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