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    LOC4328120 uncharacterized LOC4328120 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328120, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328120
    Gene description
    uncharacterized LOC4328120
    Locus tag
    OSNPB_020121200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1020_C02.13
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    Genomic context

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    See LOC4328120 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1113139..1118877, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1106260..1112004, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glutamate--tRNA ligase, chloroplastic/mitochondrial Neighboring gene glycine-rich protein 2 Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene auxilin-related protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 23S rRNA (adenine(1618)-N(6))-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328120
    Names
    OSJNBb0088N06.22
    Os02g0121200
    SAM-dependent methyltransferase-like protein
    U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
    methyltransferase-like protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1113139..1118877 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769738.3 → XP_015625224.1  uncharacterized protein LOC4328120

      UniProtKB/TrEMBL
      B9F262, Q6YUR7, Q6ZH99
      Conserved Domains (1) summary
      cl17173
      Location:15 → 324
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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