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    LOC4332337 probable BOI-related E3 ubiquitin-protein ligase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332337, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4332337
    Gene description
    probable BOI-related E3 ubiquitin-protein ligase 3
    Locus tag
    OSNPB_030263800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 34.9), flowers (RPKM 32.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8723874..8726738)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8673590..8676538)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 13 Neighboring gene uncharacterized LOC4332336 Neighboring gene uncharacterized TPR repeat-containing protein At1g05150 Neighboring gene ASC1-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable BOI-related E3 ubiquitin-protein ligase 3
    Names
    Os03g0263800
    S-ribonuclease-binding protein SBP1-like protein
    putative S-RNase-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      8723874..8726738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777577.3 → XP_015633063.1  probable BOI-related E3 ubiquitin-protein ligase 3

      UniProtKB/TrEMBL
      A0A0P0VVX2, B8AKD5, B9F766, Q84Q87
      Conserved Domains (2) summary
      TIGR04523
      Location:172 → 249
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam13920
      Location:296 → 332
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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