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    LOC4339622 probable E3 ubiquitin-protein ligase ZFP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339622, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4339622
    Gene description
    probable E3 ubiquitin-protein ligase ZFP1
    Locus tag
    OSNPB_050564300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 13.8), leaves before flowering (RPKM 13.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28269887..28277146)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28085076..28092423)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339620 Neighboring gene splicing factor U2af small subunit B Neighboring gene ras-related protein RABA1f Neighboring gene WUSCHEL-related homeobox 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ZFP1
    Names
    Os05g0564300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28269887..28277146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784359.3 → XP_015639845.1  probable E3 ubiquitin-protein ligase ZFP1

      UniProtKB/TrEMBL
      A0A0N7KL90, B8AWR5, B9FLM5, Q6AUF9
      Conserved Domains (2) summary
      COG5540
      Location:376 → 494
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cl17238
      Location:448 → 489
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_066310480.1 → XP_066166577.1  probable E3 ubiquitin-protein ligase ZFP1

      UniProtKB/TrEMBL
      A0A0N7KL90, B8AWR5, B9FLM5, Q6AUF9

    3. XM_015784360.3 → XP_015639846.1  probable E3 ubiquitin-protein ligase ZFP1

      UniProtKB/TrEMBL
      A0A0N7KL90, B8AWR5, B9FLM5, Q6AUF9
      Conserved Domains (2) summary
      COG5540
      Location:376 → 494
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cl17238
      Location:448 → 489
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_015784358.3 → XP_015639844.1  probable E3 ubiquitin-protein ligase ZFP1

      UniProtKB/TrEMBL
      A0A0N7KL90, B8AWR5, B9FLM5, Q6AUF9
      Conserved Domains (2) summary
      COG5540
      Location:376 → 494
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cl17238
      Location:448 → 489
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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