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    LOC4327973 FAM10 family protein At4g22670 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327973, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327973
    Gene description
    FAM10 family protein At4g22670
    Locus tag
    OSNPB_020100300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1370C05.2
    Expression
    Ubiquitous expression in flower buds (RPKM 53.4), flowers (RPKM 42.5) and 6 other tissues See more
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    Genomic context

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    See LOC4327973 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (20349..24735)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (14055..18479)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase-like 1-4 Neighboring gene uncharacterized LOC4327972 Neighboring gene small nucleolar RNA Z247 Neighboring gene NDR1/HIN1-like protein 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAM10 family protein At4g22670
    Names
    OSJNOa183H18.4
    Os02g0100300
    putative tetratricopeptide repeat (TPR)-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      20349..24735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770306.3 → XP_015625792.1  FAM10 family protein At4g22670 isoform X1

      UniProtKB/TrEMBL
      B8AGU4
      Conserved Domains (4) summary
      PLN03088
      Location:128 → 266
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:133 → 157
      TPR; TPR repeat [structural motif]
      pfam17830
      Location:353 → 403
      STI1; STI1 domain
      pfam18253
      Location:2 → 43
      HipN; Hsp70-interacting protein N N-terminal domain

    2. XM_015770307.3 → XP_015625793.1  FAM10 family protein At4g22670 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VDP5, B8AGU4, Q67IX4, Q6YUA1
      Conserved Domains (4) summary
      PLN03088
      Location:127 → 265
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:132 → 156
      TPR; TPR repeat [structural motif]
      pfam17830
      Location:352 → 402
      STI1; STI1 domain
      pfam18253
      Location:2 → 43
      HipN; Hsp70-interacting protein N N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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