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    LOC4332545 small ribosomal subunit protein eS7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332545, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332545
    Gene description
    small ribosomal subunit protein eS7-like
    Locus tag
    OSNPB_030297100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332545 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10444544..10446556)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10393571..10395750)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene uncharacterized protein At5g01610 Neighboring gene small ribosomal subunit protein eS7-like Neighboring gene uncharacterized LOC4332547

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS7-like
    Names
    Os03g0297100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10444544..10446556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775908.3 → XP_015631394.1  small ribosomal subunit protein eS7-like

      UniProtKB/TrEMBL
      A2XFL8, A3AH06, Q10MS5
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 188
      Ribosomal_S7e; Ribosomal protein S7e
    Nucleotide Protein
    Heading Accession and Version

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