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    LOC4332822 nuclear cap-binding protein subunit 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332822, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332822
    Gene description
    nuclear cap-binding protein subunit 1-like
    Locus tag
    OSNPB_030347200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ABH1; CBP80; OsJ_10823
    Expression
    Ubiquitous expression in flower buds (RPKM 25.7), flowers (RPKM 21.3) and 6 other tissues See more
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    Genomic context

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    See LOC4332822 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13031880..13043993)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12976118..12988246)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene metal tolerance protein 2 Neighboring gene uncharacterized LOC4332820 Neighboring gene Cysteine-tryptophan domain-containing zinc finger protein 3 Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear cap binding complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear cap-binding protein subunit 1
    Names
    80 kDa nuclear cap-binding protein
    LOC_Os03g22570
    NCBP 80 kDa subunit
    nuclear cap-binding protein CBP80

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402154.1 → NP_001389083.1  nuclear cap-binding protein subunit 1

      Status: VALIDATED

      Source sequence(s)
      AK058460, AK102852, CI122057, CI746071
      UniProtKB/Swiss-Prot
      A0A0N7KH92, B9F8F3, Q10LJ0, Q9AWB3
      UniProtKB/TrEMBL
      B8APF3

    2. NM_001417674.1 → NP_001404603.1  nuclear cap-binding protein subunit 1

      Status: VALIDATED

      Source sequence(s)
      AK058969, AK102852, AY017415, CI122057, CI331327
      UniProtKB/Swiss-Prot
      A0A0N7KH92, B9F8F3, Q10LJ0, Q9AWB3
      UniProtKB/TrEMBL
      B8APF3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13031880..13043993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10LJ0.1 GenPept UniProtKB/Swiss-Prot:Q10LJ0

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