U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4324398 glutamate synthase 1 [NADH], chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324398, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4324398
    Gene description
    glutamate synthase 1 [NADH], chloroplastic-like
    Locus tag
    OSNPB_010682001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4324398 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28679282..28691007, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28091208..28102914, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324396 Neighboring gene uncharacterized LOC4324397 Neighboring gene uncharacterized LOC4324399 Neighboring gene D-glycerate 3-kinase, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamate synthase (NADH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    glutamate synthase 1 [NADH], chloroplastic
    Names
    LOC_Os01g48960
    NADH-GOGAT 1
    NADH-dependent glutamate synthase 1
    Os01g0682001

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28679282..28691007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793756.2 → XP_015649242.1  glutamate synthase 1 [NADH], chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      Q0JKD0, Q9ZNX7
      UniProtKB/TrEMBL
      A2WTU1
      Conserved Domains (2) summary
      PRK11750
      Location:89 → 1608
      gltB; glutamate synthase subunit alpha; Provisional
      PRK12810
      Location:1660 → 2143
      gltD; glutamate synthase subunit beta; Reviewed

    2. XM_066306941.1 → XP_066163038.1  glutamate synthase 1 [NADH], chloroplastic isoform X2

      UniProtKB/TrEMBL
      A2WTU1

    3. XM_015793761.3 → XP_015649247.1  glutamate synthase 1 [NADH], chloroplastic isoform X3

      UniProtKB/TrEMBL
      B9EYM2
      Conserved Domains (9) summary
      COG0067
      Location:1 → 150
      GltB1; Glutamate synthase domain 1 [Amino acid transport and metabolism]
      COG0069
      Location:491 → 984
      GltB2; Glutamate synthase domain 2 [Amino acid transport and metabolism]
      PRK12810
      Location:1331 → 1814
      gltD; glutamate synthase subunit beta; Reviewed
      cd00982
      Location:1030 → 1279
      gltB_C; gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the ...
      cd02808
      Location:603 → 982
      GltS_FMN; Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast ...
      pfam04898
      Location:246 → 534
      Glu_syn_central; Glutamate synthase central domain
      pfam13450
      Location:1482 → 1516
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
      cl00319
      Location:1 → 198
      Gn_AT_II; Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to ...
      cl19102
      Location:1352 → 1466
      Fer4_8; 4Fe-4S dicluster domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JKD0.1 GenPept UniProtKB/Swiss-Prot:Q0JKD0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials