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    LOC4333856 transcription factor TB1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333856, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333856
    Gene description
    transcription factor TB1-like
    Locus tag
    OSNPB_030706500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TCP8; OsTB1
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    Genomic context

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    See LOC4333856 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29302237..29312960)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28428330..28430480)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1 Neighboring gene protein FAF-like, chloroplastic Neighboring gene uncharacterized LOC136355884 Neighboring gene uncharacterized LOC4333857 Neighboring gene uncharacterized LOC4333858

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Teosinte Branched 1 modulates tillering in rice plants. Choi MS, et al. Plant Cell Rep, 2012 Jan. PMID 21912860
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of secondary shoot formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TB1-like
    Names
    Os03g0706500
    TCP transcription factor 8
    teosinte branched1 protein
    transcription factor TEOSINTE BRANCHED 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29302237..29312960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774751.3 → XP_015630237.1  transcription factor TB1-like

      UniProtKB/Swiss-Prot
      Q8LN68, Q941M8, Q9ATR4
      UniProtKB/TrEMBL
      A3ALW7, Q7Y1X7
      Conserved Domains (1) summary
      pfam03634
      Location:115 → 270
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version

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